Bioconductor Meta Analysis

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microarray meta analysis

5.6 years ago lily ▴ 20

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796

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microarray microarray data Meta Analysis platform

updated 6.6 years ago by James W. MacDonald 68k • written 6.6 years ago by Jamal • 0

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microarray meta analysis cancer Software R

updated 6.7 years ago by James W. MacDonald 68k • written 6.7 years ago by Jamal • 0

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812

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MAMA pvalcombination meta analysis metaMA DEGs' indices

7.4 years ago niteshkumar20sept • 0

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meta analysis

7.8 years ago lily ▴ 20

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limma camera cohen d meta analysis

8.6 years ago Andy91 ▴ 60

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1.6k

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rnaseq metaseq clc output pvalue meta analysis

updated 8.7 years ago by Koki ▴ 10 • written 8.7 years ago by hassangiahi • 0

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2.2k

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annotation genesymbols meta analysis

9.4 years ago wahaha123 • 0

8 results • Page 1 of 1

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Comment: Heatmap of the Count Matrix by ArnulfoByrd • 0

Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …

Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k

Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…

Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k

There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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